PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG366700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 242aa    MW: 26936.2 Da    PI: 5.0146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG366700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-111802201055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.8KG366700.1.p 180 KKRRERINERLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 220
                          9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15167233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14168230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.612170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-12179224No hitNo description
PfamPF000105.4E-9180220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEAKGASIWS EESEMIAHLQ SMFWNSSDAD VSLSSPNSST SSCIEPSTLP TALFLPFNEK  60
ESYDTAPLQN AATDWCFDHQ SESFGSIDTA VTGDKRALLM DERRKKSNKK PRIVAPVLMT  120
TSSALDDKAN TELINISSSW CCSSEDDSIG VCEESVVLKQ SCSSRGRSRS SKNSQSLYAK  180
KRRERINERL KTLQQLIPNG TKVDMSTMLE EAVQYVKFLQ LQIKLLSSDE TWMYAPQPLE  240
H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179190KKRRERINERLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980781.11e-117PREDICTED: transcription factor bHLH139-like
SwissprotQ8LEG13e-35BH054_ARATH; Transcription factor bHLH54
TrEMBLK3ZNR21e-117K3ZNR2_SETIT; Uncharacterized protein
STRINGSi028242m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.15e-32root hair defective 6-like 4